PH01001614G0280's details annotation
1.Annotation
ICBR annotation: ASC1, putative, expressed
Blast result AT1G13580 : 6.00E-124
Blast annotation: LAG1 longevity assurance homolog 3
2.Location
Scaffold: PH01001614
Strand: -
| Region | Start | End |
| gene | 162538 | 168047 |
| mRNA | 162538 | 168047 |
| exon | 162538 | 163169 |
| exon | 163338 | 163519 |
| exon | 164264 | 164449 |
| exon | 164644 | 164799 |
| exon | 164891 | 165120 |
| exon | 166282 | 166316 |
| exon | 167020 | 168047 |
| CDS | 163138 | 163169 |
| CDS | 163338 | 163519 |
| CDS | 164264 | 164449 |
| CDS | 164644 | 164799 |
| CDS | 164891 | 165120 |
| CDS | 166282 | 166316 |
| CDS | 167020 | 167200 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03798.15 | TRAM_LAG1_CLN8 | 100 | 306 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.