PH01001615G0060's details annotation
1.Annotation
ICBR annotation: glutamate dehydrogenase protein, putative, expressed
Blast result AT1G51720 : 0.00E+00
Blast annotation: Amino acid dehydrogenase family protein
2.Location
Scaffold: PH01001615
Strand: -
| Region | Start | End |
| gene | 21165 | 28049 |
| mRNA | 21165 | 28049 |
| exon | 21165 | 21738 |
| exon | 21830 | 21910 |
| exon | 22182 | 22273 |
| exon | 22355 | 22512 |
| exon | 22591 | 22681 |
| exon | 24049 | 24134 |
| exon | 24216 | 24271 |
| exon | 24415 | 24486 |
| exon | 24962 | 25048 |
| exon | 25165 | 25224 |
| exon | 25300 | 25386 |
| exon | 25949 | 26150 |
| exon | 26239 | 26365 |
| exon | 26892 | 28049 |
| CDS | 21631 | 21738 |
| CDS | 21830 | 21910 |
| CDS | 22182 | 22273 |
| CDS | 22355 | 22512 |
| CDS | 22591 | 22681 |
| CDS | 24049 | 24134 |
| CDS | 24216 | 24271 |
| CDS | 24415 | 24486 |
| CDS | 24962 | 25048 |
| CDS | 25165 | 25224 |
| CDS | 25300 | 25386 |
| CDS | 25949 | 26150 |
| CDS | 26239 | 26365 |
| CDS | 26892 | 27009 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001615 | Alanine,_aspartate_and_glutamate_metabolism Nitrogen_metabolism 1,3-beta-D-glucan synthase activity, 1,3-beta-D-glucan synthase complex, exocyst, (1->3)-beta-D-glucan biosynthetic process, exocytosis, cellular amino acid metabolic process, Arginine_and_proline_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02812.17 | ELFV_dehydrog_N | 93 | 221 |
| PF00208.20 | ELFV_dehydrog | 239 | 457 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Arginine and proline metabolism | glutamate dehydrogenase (NADP+) [EC:1.4.1.4] | ko00330 | K00262 |
| Nitrogen metabolism | glutamate dehydrogenase (NADP+) [EC:1.4.1.4] | ko00910 | K00262 |
| 289 Alanine, aspartate and glutamate metabolism | glutamate dehydrogenase (NADP+) [EC:1.4.1.4] | K00262 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006520 | cellular amino acid metabolic process |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.