PH01001615G0290's details annotation
1.Annotation
ICBR annotation: sodium/calcium exchanger protein, putative, expressed
Blast result AT3G51860 : 4.40E-91
Blast annotation: cation exchanger 3
2.Location
Scaffold: PH01001615
Strand: +
| Region | Start | End |
| gene | 187741 | 194663 |
| mRNA | 187741 | 194663 |
| exon | 187741 | 188194 |
| exon | 190943 | 191010 |
| exon | 191134 | 191162 |
| exon | 191354 | 191439 |
| exon | 191641 | 191862 |
| exon | 191926 | 192171 |
| exon | 192493 | 192609 |
| exon | 193057 | 193091 |
| exon | 194184 | 194663 |
| CDS | 187955 | 188194 |
| CDS | 190943 | 191010 |
| CDS | 191134 | 191162 |
| CDS | 191354 | 191439 |
| CDS | 191641 | 191862 |
| CDS | 191926 | 192171 |
| CDS | 192493 | 192609 |
| CDS | 193057 | 193091 |
| CDS | 194184 | 194286 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01699.23 | Na_Ca_ex | 81 | 201 |
| PF01699.23 | Na_Ca_ex | 235 | 303 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.