PH01001618G0170's details annotation
1.Annotation
ICBR annotation: PB1 domain containing protein, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01001618
Strand: -
| Region | Start | End |
| gene | 112017 | 119796 |
| mRNA | 112017 | 119796 |
| exon | 112017 | 114903 |
| exon | 118037 | 118416 |
| exon | 118736 | 119796 |
| CDS | 114272 | 114903 |
| CDS | 118037 | 118416 |
| CDS | 118736 | 118764 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000431 | Porphyrin_and_chlorophyll_metabolism C2C2-Dof Transcription_Regulator(from iTAK) HB-BELL Transcription_Regulator(from iTAK) TRAF Transcription_Regulator(from iTAK) Dof Transcription_Regulator(from PlantTFDB) TALE Transcription_Regulator(from PlantTFDB) oxygen-dependent protoporphyrinogen oxidase activity, |
| coexpression network | CFinderM001035 | GT14 GlycosylTransferases CAMTA Transcription_Regulator(from PlantTFDB) microtubule, protein complex, RNA_degradation Phagosome |
| coexpression network | CFinderM001381 | CAMTA Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.