PH01001619G0070's details annotation
1.Annotation
ICBR annotation: ribonuclease H2 subunit B, putative, expressed
Blast result AT4G20325 : 1.80E-44
Blast annotation: -
2.Location
Scaffold: PH01001619
Strand: -
| Region | Start | End |
| gene | 28312 | 33400 |
| mRNA | 28312 | 33400 |
| exon | 28312 | 28921 |
| exon | 28999 | 29089 |
| exon | 29184 | 29259 |
| exon | 29858 | 29927 |
| exon | 31302 | 31366 |
| exon | 31629 | 31752 |
| exon | 32284 | 32385 |
| exon | 32538 | 32629 |
| exon | 32897 | 33400 |
| CDS | 28799 | 28921 |
| CDS | 28999 | 29089 |
| CDS | 29184 | 29259 |
| CDS | 29858 | 29927 |
| CDS | 31302 | 31366 |
| CDS | 31629 | 31752 |
| CDS | 32284 | 32385 |
| CDS | 32538 | 32629 |
| CDS | 32897 | 32951 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000690 | protein methylation, HMG Transcription_Regulator(from iTAK) GRAS Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09468.9 | RNase_H2-Ydr279 | 88 | 260 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.