Annotation of co-expression genes

PH01001619G0110's details annotation

1.Annotation

ICBR annotation: OsFBO17 - F-box and other domain containing protein, expressed

Blast result AT1G70590 : 6.20E-49
Blast annotation: F-box family protein

2.Location

Scaffold: PH01001619
Strand: -

RegionStartEnd
gene5726063231
mRNA5726063231
exon5726057650
exon5944959532
exon6018460366
exon6092861061
exon6144163231
CDS5747157650
CDS5944959532
CDS6018460366
CDS6092861061
CDS6144161567

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001497COPII vesicle coat,
ER to Golgi vesicle-mediated transport,
Protein_processing_in_endoplasmic_reticulum
signal transducer activity,
ubiquitin thiolesterase activity,
structural molecule activity,
protein binding,
transferase activity, transferring glycosyl groups,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08238.11Sel11629
PF08238.11Sel13263
PF08238.11Sel16699
PF08238.11Sel1101135
PF08238.11Sel1175194

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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