PH01001620G0350's details annotation
1.Annotation
ICBR annotation: 3-ketoacyl-CoA synthase precursor, putative, expressed
Blast result AT5G04530 : 6.10E-45
Blast annotation: 3-ketoacyl-CoA synthase 19
2.Location
Scaffold: PH01001620
Strand: +
| Region | Start | End |
| gene | 265653 | 267567 |
| mRNA | 265653 | 267567 |
| exon | 265653 | 267567 |
| CDS | 265838 | 266605 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000808 | RLK-Pelle_LRR-Xa (from iTAK) peroxisomal membrane, membrane, SBP Transcription_Regulator(from PlantTFDB) protein_import_into_peroxisome_matrix negative_regulation_of_transcription,_DNA-templated ATPase activity, transcription_corepressor_activity nucleoside-triphosphatase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08392.11 | FAE1_CUT1_RppA | 26 | 192 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0006633 | fatty acid biosynthetic process |
| GO:0008152 | metabolic process |
| GO:0016020 | membrane |
| GO:0016747 | transferase activity, transferring acyl groups other than amino-acyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.