PH01001622G0430's details annotation
1.Annotation
ICBR annotation: PPR repeat containing protein, putative, expressed
Blast result AT1G79540 : 2.00E-151
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01001622
Strand: -
| Region | Start | End |
| gene | 321197 | 324340 |
| mRNA | 321197 | 324340 |
| exon | 321197 | 324340 |
| CDS | 321410 | 323434 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13041.5 | PPR_2 | 50 | 99 |
| PF13041.5 | PPR_2 | 120 | 169 |
| PF01535.19 | PPR | 195 | 223 |
| PF13041.5 | PPR_2 | 225 | 274 |
| PF13041.5 | PPR_2 | 301 | 342 |
| PF13041.5 | PPR_2 | 413 | 461 |
| PF01535.19 | PPR | 487 | 508 |
| PF01535.19 | PPR | 559 | 587 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.