PH01001624G0020's details annotation
1.Annotation
ICBR annotation: expansin precursor, putative, expressed
Blast result AT2G40610 : 2.00E-106
Blast annotation: expansin A8
2.Location
Scaffold: PH01001624
Strand: +
| Region | Start | End |
| gene | 6260 | 8636 |
| mRNA | 6260 | 8636 |
| exon | 6260 | 6944 |
| exon | 7059 | 7410 |
| exon | 7540 | 8636 |
| CDS | 6815 | 6944 |
| CDS | 7059 | 7410 |
| CDS | 7540 | 7843 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000497 | protein complex, extracellular region, calmodulin binding, protein polymerization, plant-type cell wall organization, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03330.17 | DPBB_1 | 61 | 145 |
| PF01357.20 | Pollen_allerg_1 | 157 | 234 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005576 | extracellular region |
| GO:0009664 | plant-type cell wall organization |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.