PH01001624G0150's details annotation
1.Annotation
ICBR annotation: nucleotidyltransferase, putative, expressed
Blast result AT3G51620 : 2.00E-108
Blast annotation: PAP/OAS1 substrate-binding domain superfamily
2.Location
Scaffold: PH01001624
Strand: +
| Region | Start | End |
| gene | 74976 | 85162 |
| mRNA | 74976 | 85162 |
| exon | 74976 | 75584 |
| exon | 78297 | 78482 |
| exon | 79210 | 79395 |
| exon | 79690 | 79782 |
| exon | 79992 | 80174 |
| exon | 80277 | 80379 |
| exon | 80467 | 80652 |
| exon | 81858 | 82978 |
| exon | 83177 | 84147 |
| exon | 85030 | 85162 |
| CDS | 75402 | 75584 |
| CDS | 78297 | 78482 |
| CDS | 79210 | 79395 |
| CDS | 79690 | 79782 |
| CDS | 79992 | 80174 |
| CDS | 80277 | 80379 |
| CDS | 80467 | 80652 |
| CDS | 81858 | 82978 |
| CDS | 83177 | 84147 |
| CDS | 85030 | 85087 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000571 | glycolysis, Glycolysis_/_Gluconeogenesis Pyruvate_metabolism cytoplasm, Glycine,_serine_and_threonine_metabolism Valine,_leucine_and_isoleucine_degradation glucose catabolic process, Butirosin_and_neomycin_biosynthesis Streptomycin_biosynthesis oxidoreductase_activity,_acting_on_a_sulfur_group_of_donors,_NAD(P)_as_acceptor dihydrolipoyl dehydrogenase activity, phosphoglycerate mutase activity, fructose-bisphosphate aldolase activity, hexokinase activity, potassium ion binding, pyruvate kinase activity, catalytic activity, |
| coexpression network | CFinderM001159 | glycolysis, response to metal ion, potassium ion binding, pyruvate kinase activity, fructose-bisphosphate aldolase activity, nucleotidyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01909.22 | NTP_transf_2 | 113 | 195 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016779 | nucleotidyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.