PH01001624G0290's details annotation
1.Annotation
ICBR annotation: potassium transporter, putative, expressed
Blast result AT2G40540 : 3.00E-107
Blast annotation: potassium transporter 2
2.Location
Scaffold: PH01001624
Strand: +
| Region | Start | End |
| gene | 153746 | 159555 |
| mRNA | 153746 | 159555 |
| exon | 153746 | 155391 |
| exon | 155494 | 155728 |
| exon | 156517 | 156656 |
| exon | 156859 | 156912 |
| exon | 157186 | 157300 |
| exon | 157608 | 157868 |
| exon | 158031 | 158083 |
| exon | 158908 | 159026 |
| exon | 159285 | 159555 |
| CDS | 155353 | 155391 |
| CDS | 155494 | 155728 |
| CDS | 156517 | 156656 |
| CDS | 156859 | 156912 |
| CDS | 157186 | 157300 |
| CDS | 157608 | 157868 |
| CDS | 158031 | 158083 |
| CDS | 158908 | 159026 |
| CDS | 159285 | 159405 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02705.15 | K_trans | 25 | 302 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0015079 | potassium ion transmembrane transporter activity |
| GO:0016020 | membrane |
| GO:0071805 | potassium ion transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.