PH01001627G0480's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G13950 : 9.00E-34
Blast annotation: -
2.Location
Scaffold: PH01001627
Strand: +
| Region | Start | End |
| gene | 308718 | 313563 |
| mRNA | 308718 | 313563 |
| exon | 308718 | 309956 |
| exon | 310051 | 310208 |
| exon | 310909 | 311022 |
| exon | 311647 | 311785 |
| exon | 312286 | 312446 |
| exon | 312520 | 312649 |
| exon | 312740 | 313563 |
| CDS | 309639 | 309956 |
| CDS | 310051 | 310208 |
| CDS | 310909 | 311022 |
| CDS | 311647 | 311785 |
| CDS | 312286 | 312446 |
| CDS | 312520 | 312649 |
| CDS | 312740 | 312916 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000432 | TAZ Transcription_Regulator(from iTAK) transcription cofactor activity, histone acetyltransferase activity, threonine-type endopeptidase activity, endopeptidase activity, peptidyl-prolyl cis-trans isomerase activity, proteasome core complex, proteolysis involved in cellular protein catabolic process, Oxidative_phosphorylation Proteasome mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.