PH01001628G0230's details annotation
1.Annotation
ICBR annotation: transport protein particle component, Bet3, domain containing protein, expressed
Blast result AT3G05000 : 5.10E-55
Blast annotation: Transport protein particle (TRAPP) component
2.Location
Scaffold: PH01001628
Strand: -
| Region | Start | End |
| gene | 199344 | 204333 |
| mRNA | 199344 | 204333 |
| exon | 199344 | 200347 |
| exon | 200813 | 200929 |
| exon | 201032 | 201137 |
| exon | 201212 | 201329 |
| exon | 203130 | 204333 |
| CDS | 200217 | 200347 |
| CDS | 200813 | 200929 |
| CDS | 201032 | 201137 |
| CDS | 201212 | 201329 |
| CDS | 203130 | 203281 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04051.15 | TRAPP | 13 | 111 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.