PH01001629G0390's details annotation
1.Annotation
ICBR annotation: chloroplast unusual positioning protein, putative, expressed
Blast result AT4G18570 : 7.10E-65
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01001629
Strand: +
| Region | Start | End |
| gene | 246069 | 252354 |
| mRNA | 246069 | 252354 |
| exon | 246069 | 247647 |
| exon | 248616 | 249028 |
| exon | 249134 | 249245 |
| exon | 249928 | 250114 |
| exon | 251495 | 251550 |
| exon | 251975 | 252109 |
| exon | 252198 | 252354 |
| CDS | 246469 | 247647 |
| CDS | 248616 | 249028 |
| CDS | 249134 | 249245 |
| CDS | 249928 | 250114 |
| CDS | 251495 | 251550 |
| CDS | 251975 | 252109 |
| CDS | 252198 | 252329 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.