PH01001631G0300's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G55325 : 0.00E+00
Blast annotation: RNA polymerase II transcription mediators
2.Location
Scaffold: PH01001631
Strand: +
| Region | Start | End |
| gene | 181544 | 188737 |
| mRNA | 181544 | 188737 |
| exon | 181544 | 182884 |
| exon | 182987 | 183230 |
| exon | 183316 | 183451 |
| exon | 183547 | 183634 |
| exon | 183755 | 183833 |
| exon | 184320 | 184474 |
| exon | 186035 | 186923 |
| exon | 187178 | 187543 |
| exon | 187923 | 188737 |
| CDS | 181658 | 182884 |
| CDS | 182987 | 183230 |
| CDS | 183316 | 183451 |
| CDS | 183547 | 183634 |
| CDS | 183755 | 183833 |
| CDS | 184320 | 184474 |
| CDS | 186035 | 186923 |
| CDS | 187178 | 187543 |
| CDS | 187923 | 188554 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000256 | signal recognition particle, proton-transporting two-sector ATPase complex, proton-transporting domain, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06333.11 | Med13_C | 714 | 936 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.