Annotation of co-expression genes

PH01001636G0020's details annotation

1.Annotation

ICBR annotation: 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed

Blast result AT2G27510 : 1.40E-39
Blast annotation: ferredoxin 3

2.Location

Scaffold: PH01001636
Strand: +

RegionStartEnd
gene987512276
mRNA987512276
exon987512276
CDS1135311823

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000355OFP Transcription_Regulator(from iTAK)
electron transport chain,
RNA_degradation
Photosynthesis

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00111.26Fer270142

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Photosynthesisferredoxinko00195K02639

10.Gene Ontology

GO AccessionGO Annotation
GO:0009055electron carrier activity
GO:0022900electron transport chain
GO:0051536iron-sulfur cluster binding
GO:00515372 iron, 2 sulfur cluster binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.