Annotation of co-expression genes

PH01001636G0330's details annotation

1.Annotation

ICBR annotation: ABC transmembrane transporter domain containing protein, expressed

Blast result AT5G03910 : 2.00E-129
Blast annotation: ABC2 homolog 12

2.Location

Scaffold: PH01001636
Strand: -

RegionStartEnd
gene189075197992
mRNA189075197992
exon189075189546
exon189832189901
exon191962192037
exon192362192450
exon192577192706
exon192875193062
exon193306193391
exon193559193775
exon194151194234
exon194803195069
exon195157195264
exon197157197992
CDS189164189546
CDS189832189901
CDS191962192037
CDS192362192450
CDS192577192706
CDS192875193062
CDS193306193391
CDS193559193775
CDS194151194234
CDS194803195069
CDS195157195264
CDS197157197744

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00664.22ABC_membrane116191
PF00664.22ABC_membrane195318
PF00005.26ABC_tran384534

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0006810transport
GO:0016021integral to membrane
GO:0016887ATPase activity
GO:0017111nucleoside-triphosphatase activity
GO:0042626ATPase activity, coupled to transmembrane movement of substances
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.