PH01001641G0310's details annotation
1.Annotation
ICBR annotation: DUF292 domain containing protein, expressed
Blast result AT2G19710 : 4.20E-75
Blast annotation: Regulator of Vps4 activity in the MVB pathway protein
2.Location
Scaffold: PH01001641
Strand: -
| Region | Start | End |
| gene | 235320 | 242635 |
| mRNA | 235320 | 242635 |
| exon | 235320 | 238480 |
| exon | 238571 | 238943 |
| exon | 239025 | 239165 |
| exon | 239290 | 239461 |
| exon | 240508 | 240611 |
| exon | 241520 | 241652 |
| exon | 241775 | 242635 |
| CDS | 236043 | 238480 |
| CDS | 238571 | 238943 |
| CDS | 239025 | 239165 |
| CDS | 239290 | 239461 |
| CDS | 240508 | 240611 |
| CDS | 241520 | 241652 |
| CDS | 241775 | 241836 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000554 | EIL Transcription_Regulator(from PlantTFDB) GT20 GlycosylTransferases STE_STE11 (from iTAK) PHD Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM000672 | WRKY Transcription_Regulator(from PlantTFDB) sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity, regulation of transcription, DNA-dependent, RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03398.13 | Ist1 | 22 | 186 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.