PH01001650G0330's details annotation
1.Annotation
ICBR annotation: PHD finger protein, putative, expressed
Blast result AT5G26210 : 4.50E-48
Blast annotation: alfin-like 4
2.Location
Scaffold: PH01001650
Strand: +
| Region | Start | End |
| gene | 216337 | 223072 |
| mRNA | 216337 | 223072 |
| exon | 216337 | 216525 |
| exon | 218719 | 218756 |
| exon | 218855 | 218933 |
| exon | 219030 | 219076 |
| exon | 219909 | 219966 |
| exon | 220023 | 220251 |
| exon | 220899 | 221025 |
| exon | 221131 | 221336 |
| exon | 222640 | 222725 |
| exon | 222854 | 223072 |
| CDS | 216435 | 216525 |
| CDS | 218719 | 218756 |
| CDS | 218855 | 218933 |
| CDS | 219030 | 219076 |
| CDS | 219909 | 219966 |
| CDS | 220023 | 220251 |
| CDS | 220899 | 221025 |
| CDS | 221131 | 221336 |
| CDS | 222640 | 222725 |
| CDS | 222854 | 223002 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000005 | lipid transport, AP2/ERF-ERF Transcription_Regulator(from iTAK) ERF Transcription_Regulator(from PlantTFDB) lipid binding, ubiquitin thiolesterase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12165.7 | Alfin | 105 | 199 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.