PH01001651G0320's details annotation
1.Annotation
ICBR annotation: chalcone isomerase 3, putative, expressed
Blast result AT1G53520 : 1.90E-39
Blast annotation: Chalcone-flavanone isomerase family protein
2.Location
Scaffold: PH01001651
Strand: +
| Region | Start | End |
| gene | 232573 | 236800 |
| mRNA | 232573 | 236800 |
| exon | 232573 | 232721 |
| exon | 233192 | 233316 |
| exon | 233877 | 234050 |
| exon | 234128 | 234342 |
| exon | 234718 | 234835 |
| exon | 235653 | 235807 |
| exon | 236014 | 236800 |
| CDS | 232642 | 232721 |
| CDS | 233192 | 233316 |
| CDS | 233877 | 234050 |
| CDS | 234128 | 234342 |
| CDS | 234718 | 234835 |
| CDS | 235653 | 235807 |
| CDS | 236014 | 236175 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02431.14 | Chalcone | 77 | 267 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009813 | flavonoid biosynthetic process |
| GO:0016872 | intramolecular lyase activity |
| GO:0045430 | chalcone isomerase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.