PH01001655G0050's details annotation
1.Annotation
ICBR annotation: PWWP domain containing protein, expressed
Blast result AT5G02950 : 5.70E-52
Blast annotation: Tudor/PWWP/MBT superfamily protein
2.Location
Scaffold: PH01001655
Strand: +
| Region | Start | End |
| gene | 35499 | 46497 |
| mRNA | 35499 | 46497 |
| exon | 35499 | 38281 |
| exon | 38765 | 39127 |
| exon | 40266 | 40670 |
| exon | 40778 | 42931 |
| exon | 43025 | 46497 |
| CDS | 38146 | 38281 |
| CDS | 38765 | 39127 |
| CDS | 40266 | 40670 |
| CDS | 40778 | 42931 |
| CDS | 43025 | 44937 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00855.16 | PWWP | 405 | 492 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.