PH01001655G0100's details annotation
1.Annotation
ICBR annotation: HECT-domain domain containing protein, expressed
Blast result AT5G02880 : 0.00E+00
Blast annotation: ubiquitin-protein ligase 4
2.Location
Scaffold: PH01001655
Strand: -
| Region | Start | End |
| gene | 89029 | 95630 |
| mRNA | 89029 | 95630 |
| exon | 89029 | 89247 |
| exon | 89543 | 89626 |
| exon | 89706 | 89834 |
| exon | 89956 | 90024 |
| exon | 90106 | 90186 |
| exon | 90834 | 90938 |
| exon | 91022 | 91252 |
| exon | 91345 | 92528 |
| exon | 92631 | 92697 |
| exon | 93138 | 94233 |
| exon | 94361 | 94482 |
| exon | 94564 | 94719 |
| exon | 95622 | 95630 |
| CDS | 89182 | 89247 |
| CDS | 89543 | 89626 |
| CDS | 89706 | 89834 |
| CDS | 89956 | 90024 |
| CDS | 90106 | 90186 |
| CDS | 90834 | 90938 |
| CDS | 91022 | 91252 |
| CDS | 91345 | 92528 |
| CDS | 92631 | 92697 |
| CDS | 93138 | 94233 |
| CDS | 94361 | 94482 |
| CDS | 94564 | 94719 |
| CDS | 95622 | 95627 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000240 | RLK-Pelle_RLCK-VIII (from iTAK) integral_component_of_peroxisomal_membrane peroxisome_fission 3-oxoacyl-[acyl-carrier-protein] synthase activity, Fatty_acid_biosynthesis lipid biosynthetic process, cellular protein modification process, Ubiquitin_mediated_proteolysis |
| coexpression network | CFinderM000958 | Ubiquitin_mediated_proteolysis cellular protein modification process, intracellular, ubiquitin-protein ligase activity, Fatty_acid_biosynthesis 3-oxoacyl-[acyl-carrier-protein] synthase activity, |
| coexpression network | CFinderM001074 | SAGA complex, transcription cofactor activity, cellular protein modification process, Ubiquitin_mediated_proteolysis ubiquitin-protein ligase activity, 3-oxoacyl-[acyl-carrier-protein] synthase activity, Fatty_acid_biosynthesis intracellular, protein metabolic process, lipid biosynthetic process, binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00632.24 | HECT | 785 | 1131 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ubiquitin mediated proteolysis | E3 ubiquitin-protein ligase TRIP12 [EC:6.3.2.19] | ko04120 | K10590 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004842 | ubiquitin-protein ligase activity |
| GO:0005488 | binding |
| GO:0005622 | intracellular |
| GO:0006464 | cellular protein modification process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.