Annotation of co-expression genes

PH01001658G0200's details annotation

1.Annotation

ICBR annotation: elongation factor Tu, putative, expressed

Blast result AT5G60390 : 0.00E+00
Blast annotation: GTP binding Elongation factor Tu family protein

2.Location

Scaffold: PH01001658
Strand: +

RegionStartEnd
gene171679175369
mRNA171679175369
exon171679173297
exon173871175369
CDS172836173297
CDS173871174752

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00009.26GTP_EFTU6222
PF03144.24GTP_EFTU_D2248313
PF03143.16GTP_EFTU_D3322429

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
RNA transportelongation factor 1-alpha[EC:3.6.5.3]ko03013K03231

10.Gene Ontology

GO AccessionGO Annotation
GO:0003746translation elongation factor activity
GO:0003924GTPase activity
GO:0005525GTP binding
GO:0005737cytoplasm
GO:0006414translational elongation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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