PH01001664G0440's details annotation
1.Annotation
ICBR annotation: powdery mildew resistance protein PM3b, putative
Blast result AT3G14460 : 1.30E-91
Blast annotation: LRR and NB-ARC domains-containing disease resistance protein
2.Location
Scaffold: PH01001664
Strand: +
| Region | Start | End |
| gene | 277541 | 287315 |
| mRNA | 277541 | 287315 |
| exon | 277541 | 281009 |
| exon | 282785 | 282923 |
| exon | 285804 | 286772 |
| exon | 286893 | 287315 |
| CDS | 278301 | 281009 |
| CDS | 282785 | 282923 |
| CDS | 285804 | 286772 |
| CDS | 286893 | 286939 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001148 | RLK-Pelle_LRR-VI-1 (from iTAK) exocyst, vesicle docking involved in exocytosis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00931.21 | NB-ARC | 176 | 448 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0006952 | defense response |
| GO:0043531 | ADP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.