PH01001668G0500's details annotation
1.Annotation
ICBR annotation: AT hook motif family protein, expressed
Blast result AT4G31880 : 6.30E-86
Blast annotation: -
2.Location
Scaffold: PH01001668
Strand: +
| Region | Start | End |
| gene | 310998 | 318625 |
| mRNA | 310998 | 318625 |
| exon | 310998 | 311746 |
| exon | 311975 | 312178 |
| exon | 312254 | 312435 |
| exon | 313273 | 313399 |
| exon | 313482 | 313673 |
| exon | 314403 | 315089 |
| exon | 315545 | 315646 |
| exon | 315726 | 315808 |
| exon | 316241 | 316292 |
| exon | 316434 | 316502 |
| exon | 316586 | 316620 |
| exon | 317308 | 317382 |
| exon | 317427 | 318625 |
| CDS | 311633 | 311746 |
| CDS | 311975 | 312178 |
| CDS | 312254 | 312435 |
| CDS | 313273 | 313399 |
| CDS | 313482 | 313673 |
| CDS | 314403 | 315089 |
| CDS | 315545 | 315646 |
| CDS | 315726 | 315808 |
| CDS | 316241 | 316292 |
| CDS | 316434 | 316502 |
| CDS | 316586 | 316620 |
| CDS | 317308 | 317382 |
| CDS | 317427 | 317985 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001433 | positive_regulation_of_autophagy rRNA_catabolic_process proton-transporting V-type ATPase, V0 domain, proton-transporting two-sector ATPase complex, proton-transporting domain, ATP hydrolysis coupled proton transport, ribonuclease III activity, fructose-bisphosphate aldolase activity, double-stranded RNA binding, hydrogen ion transmembrane transporter activity, glycolysis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.