PH01001672G0070's details annotation
1.Annotation
ICBR annotation: phytoene synthase, chloroplast precursor, putative, expressed
Blast result AT5G17230 : 3.00E-156
Blast annotation: PHYTOENE SYNTHASE
2.Location
Scaffold: PH01001672
Strand: +
| Region | Start | End |
| gene | 34085 | 37835 |
| mRNA | 34085 | 37835 |
| exon | 34085 | 34740 |
| exon | 34797 | 34937 |
| exon | 35281 | 35464 |
| exon | 35660 | 35725 |
| exon | 36102 | 36337 |
| exon | 36449 | 36641 |
| exon | 36731 | 37835 |
| CDS | 34259 | 34740 |
| CDS | 34797 | 34937 |
| CDS | 35281 | 35464 |
| CDS | 35660 | 35725 |
| CDS | 36102 | 36337 |
| CDS | 36449 | 36641 |
| CDS | 36731 | 36913 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00494.18 | SQS_PSY | 136 | 391 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Carotenoid biosynthesis | phytoene synthase [EC:2.5.1.32] | ko00906 | K02291 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009058 | biosynthetic process |
| GO:0016740 | transferase activity |
| GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.