PH01001674G0300's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT3G18860 : 3.00E-163
Blast annotation: transducin family protein / WD-40 repeat family protein
2.Location
Scaffold: PH01001674
Strand: +
| Region | Start | End |
| gene | 237382 | 254561 |
| mRNA | 237382 | 254561 |
| exon | 237382 | 238858 |
| exon | 239791 | 240260 |
| exon | 240748 | 240784 |
| exon | 241326 | 241394 |
| exon | 242090 | 242158 |
| exon | 243827 | 244368 |
| exon | 245129 | 245299 |
| exon | 245534 | 245595 |
| exon | 247699 | 247787 |
| exon | 248162 | 248288 |
| exon | 248364 | 248423 |
| exon | 248655 | 248801 |
| exon | 248856 | 248936 |
| exon | 249076 | 249113 |
| exon | 249381 | 249467 |
| exon | 250680 | 250845 |
| exon | 251482 | 251559 |
| exon | 251756 | 251892 |
| exon | 252115 | 252191 |
| exon | 252314 | 252566 |
| exon | 252692 | 254561 |
| CDS | 238811 | 238858 |
| CDS | 239791 | 240260 |
| CDS | 240748 | 240784 |
| CDS | 241326 | 241394 |
| CDS | 242090 | 242158 |
| CDS | 243827 | 244368 |
| CDS | 245129 | 245299 |
| CDS | 245534 | 245595 |
| CDS | 247699 | 247787 |
| CDS | 248162 | 248288 |
| CDS | 248364 | 248423 |
| CDS | 248655 | 248801 |
| CDS | 248856 | 248936 |
| CDS | 249076 | 249113 |
| CDS | 249381 | 249467 |
| CDS | 250680 | 250845 |
| CDS | 251482 | 251559 |
| CDS | 251756 | 251892 |
| CDS | 252115 | 252191 |
| CDS | 252314 | 252566 |
| CDS | 252692 | 252799 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000492 | SCY1_SCYL1 (from iTAK) RLK-Pelle_RLCK-IXb (from iTAK) SWI/SNF-BAF60b Transcription_Regulator(from iTAK) protein binding, protein phosphatase type 2A complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 144 | 178 |
| PF00400.31 | WD40 | 415 | 442 |
| PF09070.10 | PFU | 537 | 616 |
| PF08324.10 | PUL | 668 | 965 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | phospholipase A-2-activating protein | ko04141 | K14018 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.