PH01001676G0090's details annotation
1.Annotation
ICBR annotation: transcription factor jumonji, putative, expressed
Blast result AT1G62310 : 0.00E+00
Blast annotation: transcription factor jumonji (jmjC) domain-containing protein
2.Location
Scaffold: PH01001676
Strand: +
| Region | Start | End |
| gene | 66667 | 72521 |
| mRNA | 66667 | 72521 |
| exon | 66667 | 67902 |
| exon | 67992 | 68097 |
| exon | 68443 | 68707 |
| exon | 68800 | 68863 |
| exon | 68955 | 69660 |
| exon | 70207 | 70536 |
| exon | 70904 | 71218 |
| exon | 71297 | 71369 |
| exon | 71474 | 71559 |
| exon | 71686 | 71805 |
| exon | 72379 | 72521 |
| CDS | 67376 | 67902 |
| CDS | 67992 | 68097 |
| CDS | 68443 | 68707 |
| CDS | 68800 | 68863 |
| CDS | 68955 | 69660 |
| CDS | 70207 | 70536 |
| CDS | 70904 | 71218 |
| CDS | 71297 | 71369 |
| CDS | 71474 | 71559 |
| CDS | 71686 | 71805 |
| CDS | 72379 | 72438 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Jumonji |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02373.21 | JmjC | 729 | 833 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.