Annotation of co-expression genes

PH01001676G0170's details annotation

1.Annotation

ICBR annotation: malonyl-CoA decarboxylase, mitochondrial precursor, putative, expressed

Blast result AT4G04320 : 3.00E-144
Blast annotation: malonyl-CoA decarboxylase family protein

2.Location

Scaffold: PH01001676
Strand: -

RegionStartEnd
gene119036123745
mRNA119036123745
exon119036119121
exon119570119654
exon119743119828
exon120117120189
exon120752120874
exon121203121381
exon121598121681
exon121792121869
exon121950122008
exon122310122400
exon122446122623
exon122764123745
CDS119101119121
CDS119570119654
CDS119743119828
CDS120117120189
CDS120752120874
CDS121203121381
CDS121598121681
CDS121792121869
CDS121950122008
CDS122310122400
CDS122446122623
CDS122764122954

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF17408.1MCD_N2286
PF05292.10MCD90380

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
beta-Alanine metabolismmalonyl-CoA decarboxylase [EC:4.1.1.9]ko00410K01578
Peroxisomemalonyl-CoA decarboxylase [EC:4.1.1.9]ko04146K01578
Propanoate metabolismmalonyl-CoA decarboxylase [EC:4.1.1.9]ko00640K01578

10.Gene Ontology

GO AccessionGO Annotation
GO:0006633fatty acid biosynthetic process
GO:0050080malonyl-CoA decarboxylase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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