PH01001678G0250's details annotation
1.Annotation
ICBR annotation: ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
Blast result AT5G57990 : 2.20E-65
Blast annotation: ubiquitin-specific protease 23
2.Location
Scaffold: PH01001678
Strand: +
| Region | Start | End |
| gene | 185049 | 192084 |
| mRNA | 185049 | 192084 |
| exon | 185049 | 186405 |
| exon | 186745 | 186859 |
| exon | 187516 | 187589 |
| exon | 187689 | 188015 |
| exon | 188102 | 188227 |
| exon | 189121 | 189164 |
| exon | 189233 | 189863 |
| exon | 189954 | 190079 |
| exon | 190309 | 190921 |
| exon | 191020 | 191113 |
| exon | 191278 | 192084 |
| CDS | 186154 | 186405 |
| CDS | 186745 | 186859 |
| CDS | 187516 | 187589 |
| CDS | 187689 | 188015 |
| CDS | 188102 | 188227 |
| CDS | 189121 | 189164 |
| CDS | 189233 | 189863 |
| CDS | 189954 | 190079 |
| CDS | 190309 | 190921 |
| CDS | 191020 | 191113 |
| CDS | 191278 | 191446 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000035 | ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM000246 | Protein_processing_in_endoplasmic_reticulum |
| coexpression network | CFinderM000351 | katanin_complex SAGA-type_complex |
| coexpression network | CFinderM001119 | cysteine-type peptidase activity, ubiquitin thiolesterase activity, Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00443.28 | UCH | 87 | 297 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004221 | ubiquitin thiolesterase activity |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.