PH01001678G0350's details annotation
1.Annotation
ICBR annotation: CHD3-type chromatin-remodeling factor PICKLE, putative, expressed
Blast result AT2G25170 : 7.00E-164
Blast annotation: chromatin remodeling factor CHD3 (PICKLE)
2.Location
Scaffold: PH01001678
Strand: +
| Region | Start | End |
| gene | 271394 | 279240 |
| mRNA | 271394 | 279240 |
| exon | 271394 | 271732 |
| exon | 273898 | 274274 |
| exon | 274351 | 274512 |
| exon | 275039 | 275256 |
| exon | 275371 | 275466 |
| exon | 275553 | 275689 |
| exon | 275783 | 275998 |
| exon | 276106 | 276213 |
| exon | 276434 | 276556 |
| exon | 277739 | 277789 |
| exon | 278529 | 278579 |
| exon | 278803 | 279240 |
| CDS | 271574 | 271732 |
| CDS | 273898 | 274274 |
| CDS | 274351 | 274512 |
| CDS | 275039 | 275256 |
| CDS | 275371 | 275466 |
| CDS | 275553 | 275689 |
| CDS | 275783 | 275998 |
| CDS | 276106 | 276213 |
| CDS | 276434 | 276556 |
| CDS | 277739 | 277789 |
| CDS | 278529 | 278579 |
| CDS | 278803 | 278943 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000885 | SNF2 Transcription_Regulator(from iTAK) valyl-tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis valine-tRNA ligase activity, protein binding, aminoacyl-tRNA_editing_activity mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, tRNA aminoacylation for protein translation, cellulose biosynthetic process, |
| coexpression network | CFinderM000942 | (1->3)-beta-D-glucan biosynthetic process, negative_regulation_of_transcription,_DNA-templated GT31 GlycosylTransferases SNF2 Transcription_Regulator(from iTAK) 1,3-beta-D-glucan synthase complex, |
| coexpression network | CFinderM001807 | GT31 GlycosylTransferases SNF2 Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SNF2 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00385.23 | Chromo | 148 | 184 |
| PF00385.23 | Chromo | 225 | 274 |
| PF00176.22 | SNF2_N | 330 | 492 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.