PH01001679G0030's details annotation
1.Annotation
ICBR annotation: WD-40 repeat family protein, putative, expressed
Blast result AT3G13340 : 0.00E+00
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01001679
Strand: -
| Region | Start | End |
| gene | 18507 | 24141 |
| mRNA | 18507 | 24141 |
| exon | 18507 | 19024 |
| exon | 19175 | 19261 |
| exon | 19900 | 20023 |
| exon | 20082 | 20173 |
| exon | 20596 | 20706 |
| exon | 20811 | 20945 |
| exon | 21765 | 21851 |
| exon | 21919 | 22086 |
| exon | 22862 | 24141 |
| CDS | 18611 | 19024 |
| CDS | 19175 | 19261 |
| CDS | 19900 | 20023 |
| CDS | 20082 | 20173 |
| CDS | 20596 | 20706 |
| CDS | 20811 | 20945 |
| CDS | 21765 | 21851 |
| CDS | 21919 | 22086 |
| CDS | 22862 | 23002 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000169 | peroxisomal membrane, protein_import_into_peroxisome_matrix negative_regulation_of_transcription,_DNA-templated transcription_corepressor_activity Galactose_metabolism Peroxisome Pentose_and_glucuronate_interconversions Pyruvate_metabolism Glycerolipid_metabolism Fructose_and_mannose_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 314 | 352 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.