PH01001682G0080's details annotation
1.Annotation
ICBR annotation: aspartic proteinase-like protein 2 precursor, putative, expressed
Blast result AT1G05840 : 7.00E-118
Blast annotation: Eukaryotic aspartyl protease family protein
2.Location
Scaffold: PH01001682
Strand: -
| Region | Start | End |
| gene | 40418 | 46203 |
| mRNA | 40418 | 46203 |
| exon | 40418 | 41311 |
| exon | 41383 | 41473 |
| exon | 43103 | 43173 |
| exon | 43257 | 43419 |
| exon | 44883 | 45107 |
| exon | 45217 | 45464 |
| exon | 45595 | 45724 |
| exon | 45822 | 46203 |
| CDS | 41246 | 41311 |
| CDS | 41383 | 41473 |
| CDS | 43103 | 43173 |
| CDS | 43257 | 43419 |
| CDS | 44883 | 45107 |
| CDS | 45217 | 45464 |
| CDS | 45595 | 45724 |
| CDS | 45822 | 46075 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14543.5 | TAXi_N | 87 | 271 |
| PF14541.5 | TAXi_C | 288 | 393 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004190 | aspartic-type endopeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.