PH01001683G0140's details annotation
1.Annotation
ICBR annotation: aluminum-activated malate transporter, putative, expressed
Blast result AT4G17970 : 9.00E-154
Blast annotation: aluminum-activated, malate transporter 12
2.Location
Scaffold: PH01001683
Strand: +
| Region | Start | End |
| gene | 112694 | 115604 |
| mRNA | 112694 | 115604 |
| exon | 112694 | 113714 |
| exon | 113811 | 113951 |
| exon | 114027 | 114299 |
| exon | 114392 | 114519 |
| exon | 114662 | 114805 |
| exon | 114935 | 115604 |
| CDS | 113441 | 113714 |
| CDS | 113811 | 113951 |
| CDS | 114027 | 114299 |
| CDS | 114392 | 114519 |
| CDS | 114662 | 114805 |
| CDS | 114935 | 115561 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000391 | translation release factor activity, translation release factor activity, codon specific, potassium ion transport, translational termination, malate_transport solute:hydrogen antiporter activity, transmembrane transport, integral to membrane, |
| coexpression network | CFinderM000392 | malate_transport Peroxisome Glyoxylate_and_dicarboxylate_metabolism glycopeptide_alpha-N-acetylgalactosaminidase_activity serine-type carboxypeptidase activity, FMN binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF11744.7 | ALMT | 36 | 486 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0015743 | malate transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.