PH01001683G0270's details annotation
1.Annotation
ICBR annotation: methyltransferase, putative, expressed
Blast result AT1G26850 : 4.20E-83
Blast annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
2.Location
Scaffold: PH01001683
Strand: -
| Region | Start | End |
| gene | 180953 | 185483 |
| mRNA | 180953 | 185483 |
| exon | 180953 | 181291 |
| exon | 182285 | 182346 |
| exon | 182414 | 182515 |
| exon | 184553 | 184736 |
| exon | 184823 | 184900 |
| exon | 185007 | 185483 |
| CDS | 181174 | 181291 |
| CDS | 182285 | 182346 |
| CDS | 182414 | 182515 |
| CDS | 184553 | 184736 |
| CDS | 184823 | 184900 |
| CDS | 185007 | 185362 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000887 | SWI/SNF-BAF60b Transcription_Regulator(from iTAK) histone modification, transcription initiation, DNA-dependent, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03141.15 | Methyltransf_29 | 1 | 206 |
| PF00650.19 | CRAL_TRIO | 206 | 261 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008168 | methyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.