PH01001684G0460's details annotation
1.Annotation
ICBR annotation: ras-related protein, putative, expressed
Blast result AT5G65270 : 7.40E-30
Blast annotation: RAB GTPase homolog A4A
2.Location
Scaffold: PH01001684
Strand: +
| Region | Start | End |
| gene | 257228 | 258282 |
| mRNA | 257228 | 258282 |
| exon | 257228 | 258282 |
| CDS | 257494 | 257778 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001278 | protein_kinase_binding ATPase activity, coupled to transmembrane movement of substances, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00071.21 | Ras | 12 | 71 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005525 | GTP binding |
| GO:0007264 | small GTPase mediated signal transduction |
| GO:0015031 | protein transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.