Annotation of co-expression genes

PH01001686G0140's details annotation

1.Annotation

ICBR annotation: protein kinase family protein, putative, expressed

Blast result AT1G51940 : 9.40E-84
Blast annotation: protein kinase family protein / peptidoglycan-binding LysM domain-containing protein

2.Location

Scaffold: PH01001686
Strand: -

RegionStartEnd
gene7356984855
mRNA7356984855
exon7356973696
exon7386773950
exon7430374454
exon7483274937
exon7665376874
exon7760877721
exon7878578935
exon7902979126
exon7921879369
exon7974779852
exon8086581148
exon8151181588
exon8255284855
CDS7357773696
CDS7386773950
CDS7430374454
CDS7483274937
CDS7665376874
CDS7760877721
CDS7878578935
CDS7902979126
CDS7921879369
CDS7974779852
CDS8086581148
CDS8151181588
CDS8255283206

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000057RLK-Pelle_LysM (from iTAK)
protein phosphorylation,
STE_STE20-Pl (from iTAK)
RLK-Pelle_LRR-VIII-1 (from iTAK)
transferase activity, transferring phosphorus-containing groups,
protein kinase activity,
regulation of ARF GTPase activity,
ATP binding,
ARF GTPase activator activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07714.16Pkinase_Tyr338490
PF07714.16Pkinase_Tyr617706

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.