PH01001686G0260's details annotation
1.Annotation
ICBR annotation: F-actin-capping protein subunit beta, putative, expressed
Blast result AT1G71790 : 6.00E-110
Blast annotation: Subunits of heterodimeric actin filament capping protein Capz superfamily
2.Location
Scaffold: PH01001686
Strand: -
| Region | Start | End |
| gene | 166894 | 170224 |
| mRNA | 166894 | 170224 |
| exon | 166894 | 167333 |
| exon | 167429 | 167524 |
| exon | 168277 | 168396 |
| exon | 168514 | 168575 |
| exon | 168662 | 168744 |
| exon | 168856 | 168969 |
| exon | 169420 | 169490 |
| exon | 169984 | 170224 |
| CDS | 167250 | 167333 |
| CDS | 167429 | 167524 |
| CDS | 168277 | 168396 |
| CDS | 168514 | 168575 |
| CDS | 168662 | 168744 |
| CDS | 168856 | 168969 |
| CDS | 169420 | 169490 |
| CDS | 169984 | 170100 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001048 | F-actin capping protein complex, WASH_complex actin cytoskeleton organization, actin binding, CK1_CK1 (from iTAK) macromolecule biosynthetic process, cytoplasm, holo-[acyl-carrier-protein] synthase activity, Pantothenate_and_CoA_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01115.16 | F_actin_cap_B | 1 | 231 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003779 | actin binding |
| GO:0005737 | cytoplasm |
| GO:0008290 | F-actin capping protein complex |
| GO:0030036 | actin cytoskeleton organization |
| GO:0071203 | WASH complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.