Annotation of co-expression genes

PH01001686G0330's details annotation

1.Annotation

ICBR annotation: 40S ribosomal protein S9-2, putative, expressed

Blast result AT5G39850 : 9.10E-88
Blast annotation: Ribosomal protein S4

2.Location

Scaffold: PH01001686
Strand: -

RegionStartEnd
gene201464204064
mRNA201464204064
exon201464201730
exon202968203349
exon203958204064
CDS201553201730
CDS202968203349
CDS203958203985

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000525Ribosome
structural constituent of ribosome,
intracellular,
translation,
rRNA binding,
small ribosomal subunit,
RNA binding,
Ribosome
translational elongation,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00163.18Ribosomal_S42574
PF01479.24S4119162

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Ribosomesmall subunit ribosomal protein S9eko03011K02997

10.Gene Ontology

GO AccessionGO Annotation
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
GO:0005622intracellular
GO:0006412translation
GO:0015935small ribosomal subunit
GO:0019843rRNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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