PH01001688G0150's details annotation
1.Annotation
ICBR annotation: G-patch domain containing protein, expressed
Blast result AT5G26610 : 8.80E-81
Blast annotation: D111/G-patch domain-containing protein
2.Location
Scaffold: PH01001688
Strand: -
| Region | Start | End |
| gene | 123908 | 127603 |
| mRNA | 123908 | 127603 |
| exon | 123908 | 124441 |
| exon | 124823 | 124973 |
| exon | 125082 | 125191 |
| exon | 125303 | 125446 |
| exon | 125688 | 125842 |
| exon | 126936 | 127194 |
| exon | 127307 | 127603 |
| CDS | 124355 | 124441 |
| CDS | 124823 | 124973 |
| CDS | 125082 | 125191 |
| CDS | 125303 | 125446 |
| CDS | 125688 | 125842 |
| CDS | 126936 | 127194 |
| CDS | 127307 | 127309 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000592 | transcription, DNA-dependent, cytoplasm, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01585.22 | G-patch | 65 | 105 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.