PH01001692G0030's details annotation
1.Annotation
ICBR annotation: scarecrow, putative, expressed
Blast result AT4G00150 : 1.20E-78
Blast annotation: GRAS family transcription factor
2.Location
Scaffold: PH01001692
Strand: -
| Region | Start | End |
| gene | 37541 | 40431 |
| mRNA | 37541 | 40431 |
| exon | 37541 | 40431 |
| CDS | 38006 | 40159 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | phe-miR171e | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | GRAS |
| Transcription_Regulator(from PlantTFDB) | GRAS |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03514.13 | GRAS | 359 | 716 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.