PH01001696G0160's details annotation
1.Annotation
ICBR annotation: cytochrome b6f complex subunit, putative, expressed
Blast result AT2G26500 : 1.80E-21
Blast annotation: cytochrome b6f complex subunit (petM), putative
2.Location
Scaffold: PH01001696
Strand: -
| Region | Start | End |
| gene | 116119 | 117537 |
| mRNA | 116119 | 117537 |
| exon | 116119 | 117537 |
| CDS | 117029 | 117376 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001533 | RLK-Pelle_LRR-Xa (from iTAK) cytochrome b6f complex, Ubiquinone_and_other_terpenoid-quinone_biosynthesis translation, cation binding, structural constituent of ribosome, alpha-amylase activity, large ribosomal subunit, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08041.10 | PetM | 81 | 108 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009512 | cytochrome b6f complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.