PH01001696G0220's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G66950 : 9.00E-145
Blast annotation: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
2.Location
Scaffold: PH01001696
Strand: -
| Region | Start | End |
| gene | 179586 | 183734 |
| mRNA | 179586 | 183734 |
| exon | 179586 | 183734 |
| CDS | 180337 | 182115 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000264 | intrinsic to endoplasmic reticulum membrane, GT22 GlycosylTransferases HD-ZIP Transcription_Regulator(from PlantTFDB) HB-HD-ZIP Transcription_Regulator(from iTAK) oxoglutarate dehydrogenase (succinyl-transferring) activity, thiamine pyrophosphate binding, oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, Citrate_cycle_(TCA_cycle) Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis Lysine_degradation Tryptophan_metabolism carbon-nitrogen ligase activity, with glutamine as amido-N-donor, tricarboxylic acid cycle, GPI anchor biosynthetic process, |
| coexpression network | CFinderM001435 | Jumonji Transcription_Regulator(from iTAK) PHD Transcription_Regulator(from iTAK) RNA_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.