PH01001697G0330's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G04280 : 2.70E-85
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01001697
Strand: -
| Region | Start | End |
| gene | 221364 | 227837 |
| mRNA | 221364 | 227837 |
| exon | 221364 | 221790 |
| exon | 221913 | 222054 |
| exon | 222175 | 222533 |
| exon | 223125 | 223209 |
| exon | 223878 | 224001 |
| exon | 224653 | 224729 |
| exon | 225277 | 225529 |
| exon | 225607 | 225682 |
| exon | 226180 | 226309 |
| exon | 226435 | 226668 |
| exon | 227641 | 227837 |
| CDS | 221524 | 221790 |
| CDS | 221913 | 222054 |
| CDS | 222175 | 222533 |
| CDS | 223125 | 223209 |
| CDS | 223878 | 224001 |
| CDS | 224653 | 224729 |
| CDS | 225277 | 225529 |
| CDS | 225607 | 225682 |
| CDS | 226180 | 226309 |
| CDS | 226435 | 226668 |
| CDS | 227641 | 227687 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001429 | negative_regulation_of_transcription,_DNA-templated FMN binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0016301 | kinase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.