Annotation of co-expression genes

PH01001699G0100's details annotation

1.Annotation

ICBR annotation: splicing factor U2AF, putative, expressed

Blast result AT1G27650 : 2.00E-101
Blast annotation: U2 snRNP auxiliary factor small subunit, putative

2.Location

Scaffold: PH01001699
Strand: -

RegionStartEnd
gene6040262501
mRNA6040262501
exon6040262501
CDS6150862362

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000295translation,
AGC_RSK-2 (from iTAK)
CMGC_GSK (from iTAK)
Ribosome
intracellular,
protein phosphorylation,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00642.23zf-CCCH1438
PF00076.21RRM_183139
PF00642.23zf-CCCH150174

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Spliceosomesplicing factor U2AF 35 kDa subunitko03041K12836

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0005634nucleus
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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