PH01001710G0190's details annotation
1.Annotation
ICBR annotation: OsFBT5 - F-box and tubby domain containing protein, expressed
Blast result AT2G47900 : 6.00E-116
Blast annotation: tubby like protein 3
2.Location
Scaffold: PH01001710
Strand: +
| Region | Start | End |
| gene | 127483 | 131877 |
| mRNA | 127483 | 131877 |
| exon | 127483 | 127773 |
| exon | 129131 | 129193 |
| exon | 129297 | 129384 |
| exon | 129511 | 129640 |
| exon | 130067 | 130246 |
| exon | 130608 | 131877 |
| CDS | 127699 | 127773 |
| CDS | 129131 | 129193 |
| CDS | 129297 | 129384 |
| CDS | 129511 | 129640 |
| CDS | 130067 | 130246 |
| CDS | 130608 | 131076 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | TUB |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01167.17 | Tub | 47 | 329 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.