Annotation of co-expression genes

PH01001716G0280's details annotation

1.Annotation

ICBR annotation: OsSub4 - Putative Subtilisin homologue, expressed

Blast result AT4G20430 : 0.00E+00
Blast annotation: Subtilase family protein

2.Location

Scaffold: PH01001716
Strand: +

RegionStartEnd
gene201576208813
mRNA201576208813
exon201576202143
exon203235203388
exon203780204177
exon204795204890
exon204971205043
exon205319205601
exon205698206029
exon206220206490
exon207118207399
exon208015208813
CDS201896202143
CDS203235203388
CDS203780204177
CDS204795204890
CDS204971205043
CDS205319205601
CDS205698206029
CDS206220206490
CDS207118207399
CDS208015208427

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05922.15Inhibitor_I938156
PF00082.21Peptidase_S8181669

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004252serine-type endopeptidase activity
GO:0006508proteolysis
GO:0042802identical protein binding
GO:0043086negative regulation of catalytic activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.