Annotation of co-expression genes

PH01001720G0320's details annotation

1.Annotation

ICBR annotation: molybdenum cofactor biosynthesis protein 1, putative, expressed

Blast result AT2G31955 : 3.00E-161
Blast annotation: cofactor of nitrate reductase and xanthine dehydrogenase 2

2.Location

Scaffold: PH01001720
Strand: -

RegionStartEnd
gene237871242930
mRNA237871242930
exon237871238073
exon238490238558
exon239546239737
exon239900240067
exon240210240824
exon241559241630
exon242478242930
CDS237972238073
CDS238490238558
CDS239546239737
CDS239900240067
CDS240210240824
CDS241559241630
CDS242478242531

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04055.20Radical_SAM106267
PF13353.5Fer4_12109221
PF06463.12Mob_synth_C273390

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Folate biosynthesismolybdenum cofactor biosynthesis proteinko00790K03639
Sulfur relay systemmolybdenum cofactor biosynthesis proteinko04122K03639

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0006777Mo-molybdopterin cofactor biosynthetic process
GO:0019008molybdopterin synthase complex
GO:0046872metal ion binding
GO:0051536iron-sulfur cluster binding
GO:00515394 iron, 4 sulfur cluster binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.