Annotation of co-expression genes

PH01001725G0150's details annotation

1.Annotation

ICBR annotation: NAD dependent epimerase/dehydratase family domain containing protein, expressed

Blast result AT1G78570 : 3.00E-151
Blast annotation: rhamnose biosynthesis 1

2.Location

Scaffold: PH01001725
Strand: +

RegionStartEnd
gene112502119809
mRNA112502119809
exon112502114402
exon114492114618
exon116215116270
exon116388116519
exon118157119809
CDS114214114402
CDS114492114618
CDS116215116270
CDS116388116519
CDS118157119248

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)GNAT

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00583.24Acetyltransf_161127
PF16363.4GDP_Man_Dehyd181488

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Polyketide sugar unit biosynthesisdTDP-glucose 4,6-dehydratase [EC:4.2.1.46]ko00523K01710
Biosynthesis of vancomycin group antibioticsdTDP-glucose 4,6-dehydratase [EC:4.2.1.46]ko01055K01710
Streptomycin biosynthesisdTDP-glucose 4,6-dehydratase [EC:4.2.1.46]ko00521K01710

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0008080N-acetyltransferase activity
GO:0044237cellular metabolic process
GO:0050662coenzyme binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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