PH01001726G0060's details annotation
1.Annotation
ICBR annotation: trehalose-6-phosphate synthase, putative, expressed
Blast result AT1G78580 : 0.00E+00
Blast annotation: trehalose-6-phosphate synthase
2.Location
Scaffold: PH01001726
Strand: +
| Region | Start | End |
| gene | 39958 | 51947 |
| mRNA | 39958 | 51947 |
| exon | 39958 | 40658 |
| exon | 41570 | 41684 |
| exon | 41914 | 42015 |
| exon | 42642 | 42792 |
| exon | 43728 | 43816 |
| exon | 44132 | 44180 |
| exon | 44345 | 44445 |
| exon | 44594 | 44781 |
| exon | 44922 | 45039 |
| exon | 45313 | 45441 |
| exon | 48615 | 48794 |
| exon | 48891 | 49013 |
| exon | 49089 | 49176 |
| exon | 49274 | 49404 |
| exon | 49499 | 49597 |
| exon | 51486 | 51947 |
| CDS | 40621 | 40658 |
| CDS | 41570 | 41684 |
| CDS | 41914 | 42015 |
| CDS | 42642 | 42792 |
| CDS | 43728 | 43816 |
| CDS | 44132 | 44180 |
| CDS | 44345 | 44445 |
| CDS | 44594 | 44781 |
| CDS | 44922 | 45039 |
| CDS | 45313 | 45441 |
| CDS | 48615 | 48794 |
| CDS | 48891 | 49013 |
| CDS | 49089 | 49176 |
| CDS | 49274 | 49404 |
| CDS | 49499 | 49597 |
| CDS | 51486 | 51905 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT20 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00982.20 | Glyco_transf_20 | 12 | 281 |
| PF02358.15 | Trehalose_PPase | 383 | 588 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0005992 | trehalose biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.